Wish I could hear the noise myself; that would help a bunch. The 1500 is known for 1-2 shift noise, so it MAY be normal. It also may be the way you are shifting? Make sure you are pulling the clutch all the way in, pulling on the shifter fully... clutch and shift linkages adjusted properly?
'01 1500 Nomad
"we are small and exposed, and probably moving too fast for our own good"